HL_8C8X_007

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.1578

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

8C8X|1|A|C|225
8C8X|1|A|A|226
8C8X|1|A|A|227
8C8X|1|A|C|228
8C8X|1|A|C|229
8C8X|1|A|G|230

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15