HL_8C8X_011

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8C8X|1|A|G|329, 8C8X|1|A|A|330, 8C8X|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1783

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8C8X|1|A|G|327
8C8X|1|A|U|328
8C8X|1|A|G|329
8C8X|1|A|A|330
8C8X|1|A|C|331
8C8X|1|A|A|332
8C8X|1|A|G|333
8C8X|1|A|C|334
8C8X|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24