HL_8C8X_016

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

8C8X|1|A|U|546, 8C8X|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.368

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8C8X|1|A|C|542
8C8X|1|A|G|543
8C8X|1|A|C|544
8C8X|1|A|U|545
8C8X|1|A|U|546
8C8X|1|A|A|547
8C8X|1|A|G|548
8C8X|1|A|G|549
8C8X|1|A|C|550
8C8X|1|A|G|551

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21