HL_8C8X_023

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8C8X|1|A|A|781, 8C8X|1|A|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_023 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1897

The information below is about HL_7A0S_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8C8X|1|A|U|779
8C8X|1|A|G|780
8C8X|1|A|A|781
8C8X|1|A|A|782
8C8X|1|A|A|783
8C8X|1|A|G|784
8C8X|1|A|G|785

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2