HL_8C8X_025

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_025 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2423

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8C8X|1|A|U|884
8C8X|1|A|C|885
8C8X|1|A|A|886
8C8X|1|A|U|887
8C8X|1|A|C|888
8C8X|1|A|C|889
8C8X|1|A|C|890
8C8X|1|A|G|891
8C8X|1|A|A|892

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5