3D structure

PDB id
8C8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.93 Å

Loop

Sequence
UGCUAACG
Length
8 nucleotides
Bulged bases
8C8X|1|A|U|958, 8C8X|1|A|C|961
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C8X_026 not in the Motif Atlas
Homologous match to HL_4WF9_027
Geometric discrepancy: 0.4358
The information below is about HL_4WF9_027
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8C8X|1|A|U|955
8C8X|1|A|G|956
8C8X|1|A|C|957
8C8X|1|A|U|958
8C8X|1|A|A|959
8C8X|1|A|A|960
8C8X|1|A|C|961
8C8X|1|A|G|962

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain M
50S ribosomal protein L16

Coloring options:


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