HL_8C8X_026
3D structure
- PDB id
- 8C8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM captures early ribosome assembly in action
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.93 Å
Loop
- Sequence
- UGCUAACG
- Length
- 8 nucleotides
- Bulged bases
- 8C8X|1|A|U|958, 8C8X|1|A|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8C8X_026 not in the Motif Atlas
- Homologous match to HL_4WF9_027
- Geometric discrepancy: 0.4358
- The information below is about HL_4WF9_027
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.7
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 349
Unit IDs
8C8X|1|A|U|955
8C8X|1|A|G|956
8C8X|1|A|C|957
8C8X|1|A|U|958
8C8X|1|A|A|959
8C8X|1|A|A|960
8C8X|1|A|C|961
8C8X|1|A|G|962
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
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