HL_8C8X_062

3D structure

PDB id

8C8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.93 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8C8X|1|A|A|2750, 8C8X|1|A|G|2751, 8C8X|1|A|C|2752, 8C8X|1|A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8X_062 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.229

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8C8X|1|A|C|2745
8C8X|1|A|U|2746
8C8X|1|A|G|2747
8C8X|1|A|A|2748
8C8X|1|A|A|2749
8C8X|1|A|A|2750
8C8X|1|A|G|2751
8C8X|1|A|C|2752
8C8X|1|A|A|2753
8C8X|1|A|U|2754
8C8X|1|A|C|2755
8C8X|1|A|U|2756
8C8X|1|A|A|2757
8C8X|1|A|A|2758
8C8X|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains