HL_8C8Y_009

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8C8Y|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.159

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8C8Y|1|A|C|305
8C8Y|1|A|U|306
8C8Y|1|A|G|307
8C8Y|1|A|G|308
8C8Y|1|A|A|309
8C8Y|1|A|A|310
8C8Y|1|A|A|311
8C8Y|1|A|G|312

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24