HL_8C8Y_012

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

8C8Y|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.3309

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8C8Y|1|A|G|381
8C8Y|1|A|A|382
8C8Y|1|A|C|383
8C8Y|1|A|A|384
8C8Y|1|A|C|385
8C8Y|1|A|G|386
8C8Y|1|A|U|387
8C8Y|1|A|G|388
8C8Y|1|A|G|389
8C8Y|1|A|U|390
8C8Y|1|A|A|391
8C8Y|1|A|U|392
8C8Y|1|A|C|393

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28