HL_8C8Y_016

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

8C8Y|1|A|U|546, 8C8Y|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_016 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.2072

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C8Y|1|A|G|543
8C8Y|1|A|C|544
8C8Y|1|A|U|545
8C8Y|1|A|U|546
8C8Y|1|A|A|547
8C8Y|1|A|G|548
8C8Y|1|A|G|549
8C8Y|1|A|C|550

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21