HL_8C8Y_050

3D structure

PDB id

8C8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8C8Y|1|A|A|2268, 8C8Y|1|A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Y_050 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.3639

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8C8Y|1|A|C|2264
8C8Y|1|A|U|2265
8C8Y|1|A|A|2266
8C8Y|1|A|A|2267
8C8Y|1|A|A|2268
8C8Y|1|A|G|2269
8C8Y|1|A|A|2270
8C8Y|1|A|G|2271
8C8Y|1|A|U|2272
8C8Y|1|A|A|2273
8C8Y|1|A|A|2274
8C8Y|1|A|C|2275
8C8Y|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27