HL_8C8Z_006

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8C8Z|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_006 not in the Motif Atlas

Homologous match to HL_9DFE_005

Geometric discrepancy: 0.3047

The information below is about HL_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8C8Z|1|A|G|194
8C8Z|1|A|A|195
8C8Z|1|A|A|196
8C8Z|1|A|A|197
8C8Z|1|A|C|198
8C8Z|1|A|A|199
8C8Z|1|A|U|200
8C8Z|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L28