HL_9DFE_005

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9DFE|1|1A|A|196, 9DFE|1|1A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9DFE|1|1A|G|194
9DFE|1|1A|A|195
9DFE|1|1A|A|196
9DFE|1|1A|A|197
9DFE|1|1A|C|198
9DFE|1|1A|A|199
9DFE|1|1A|U|200
9DFE|1|1A|C|201

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1P

50S ribosomal protein L15