HL_8C8Z_013

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8C8Z|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1688

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8C8Z|1|A|G|410
8C8Z|1|A|G|411
8C8Z|1|A|A|412
8C8Z|1|A|C|413
8C8Z|1|A|C|414
8C8Z|1|A|A|415
8C8Z|1|A|U|416
8C8Z|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15