HL_8C8Z_051

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8C8Z|1|A|G|2751, 8C8Z|1|A|C|2755, 8C8Z|1|A|U|2756, 8C8Z|1|A|A|2758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C8Z_051 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.4371

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8C8Z|1|A|C|2745
8C8Z|1|A|U|2746
8C8Z|1|A|G|2747
8C8Z|1|A|A|2748
8C8Z|1|A|A|2749
8C8Z|1|A|A|2750
8C8Z|1|A|G|2751
8C8Z|1|A|C|2752
8C8Z|1|A|A|2753
8C8Z|1|A|U|2754
8C8Z|1|A|C|2755
8C8Z|1|A|U|2756
8C8Z|1|A|A|2757
8C8Z|1|A|A|2758
8C8Z|1|A|G|2759

Current chains

Chain A

23S rRNA

Nearby chains