HL_8C90_016

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGCUUAGGCG

Length

10 nucleotides

Bulged bases

8C90|1|A|U|545, 8C90|1|A|U|546, 8C90|1|A|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C90_016 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2488

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8C90|1|A|C|542
8C90|1|A|G|543
8C90|1|A|C|544
8C90|1|A|U|545
8C90|1|A|U|546
8C90|1|A|A|547
8C90|1|A|G|548
8C90|1|A|G|549
8C90|1|A|C|550
8C90|1|A|G|551

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21