HL_8C90_057

3D structure

PDB id

8C90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8C90|1|A|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C90_057 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.4097

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8C90|1|A|G|410
8C90|1|A|G|411
8C90|1|A|A|412
8C90|1|A|C|413
8C90|1|A|C|414
8C90|1|A|A|415
8C90|1|A|U|416
8C90|1|A|C|417

Current chains

Chain A

23S rRNA

Nearby chains