HL_8C91_020

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

8C91|1|A|A|643, 8C91|1|A|U|646

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C91_020 not in the Motif Atlas

Geometric match to HL_4WF9_004

Geometric discrepancy: 0.3963

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8C91|1|A|C|640
8C91|1|A|U|641
8C91|1|A|U|642
8C91|1|A|A|643
8C91|1|A|A|644
8C91|1|A|C|645
8C91|1|A|U|646
8C91|1|A|G|647
8C91|1|A|G|648

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15