8C91 | Motifs

57 Hairpin loops
81 Internal loops
30 Junction loops

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
HL_8C91_001	1/A/59:68	No text annotation	homologous HL_5J7L_134 NA
HL_8C91_002	1/A/87:95	No text annotation	homologous HL_5J7L_135 NA
HL_8C91_003	1/A/123:128	No text annotation	homologous HL_4WF9_003 HL_75660.6
HL_8C91_009	1/A/305:312	No text annotation	homologous HL_7RQB_010 NA
HL_8C91_010	1/A/319:323	No text annotation	homologous HL_7RQB_011 NA
HL_8C91_011	1/A/327:335	T-loop with unstacked turn	homologous HL_5J7L_144 NA
HL_8C91_014	1/A/462:467	GNRA	homologous HL_4WF9_015 HL_34789.1
HL_8C91_029	1/A/1222:1227	GNRA	homologous HL_7A0S_031 HL_34789.1
HL_8C91_031	1/A/1324:1330	Pseudoknot geometry with 3' bulge	homologous HL_5J7L_166 NA
HL_8C91_033	1/A/1389:1398	No text annotation	homologous HL_4WF9_035 HL_77449.1
HL_8C91_034	1/A/1451:1459	Mini UNCG with extended bulge	homologous HL_5J7L_169 NA
HL_8C91_041	1/A/1728:1733	No text annotation
HL_8C91_046	1/A/2027:2036	No text annotation	homologous HL_4WF9_047 HL_78372.1
HL_8C91_053	1/A/2856:2861	GNRA	homologous HL_7A0S_068 HL_34789.1

Problematic loops

loop id	Problem	Sequence
HL_8C91_004	poor quality numbers	UNCG
HL_8C91_005	poor quality numbers	No text annotation
HL_8C91_006	Deprecated	No text annotation
HL_8C91_057	poor quality numbers	No text annotation
HL_8C91_007	poor quality numbers	No text annotation
HL_8C91_008	poor quality numbers	No text annotation
HL_8C91_012	poor quality numbers	No text annotation
HL_8C91_013	poor quality numbers	No text annotation
HL_8C91_015	poor quality numbers	GNRA
HL_8C91_016	poor quality numbers	No text annotation
HL_8C91_017	poor quality numbers	No text annotation
HL_8C91_018	poor quality numbers	No text annotation
HL_8C91_019	poor quality numbers	GNRA
HL_8C91_020	Deprecated	GNRA wlth tandem sheared
HL_8C91_054	poor quality numbers	GNRA
HL_8C91_021	poor quality numbers	GNRA wlth tandem sheared
HL_8C91_022	poor quality numbers	No text annotation
HL_8C91_023	Deprecated	No text annotation
HL_8C91_055	poor quality numbers	No text annotation
HL_8C91_024	poor quality numbers	No text annotation
HL_8C91_025	missing nts	No text annotation
HL_8C91_056	poor quality numbers	No text annotation
HL_8C91_026	poor quality numbers	No text annotation
HL_8C91_027	poor quality numbers	No text annotation
HL_8C91_028	poor quality numbers	No text annotation
HL_8C91_030	poor quality numbers	T-loop with 2 stacked bulged bases
HL_8C91_032	poor quality numbers	GNRA
HL_8C91_035	poor quality numbers	Pseudoknot geometry with 3' bulge
HL_8C91_036	poor quality numbers	UNCG
HL_8C91_037	poor quality numbers	No text annotation
HL_8C91_038	poor quality numbers	No text annotation
HL_8C91_039	poor quality numbers	GNRA
HL_8C91_040	missing nts	No text annotation
HL_8C91_042	poor quality numbers	No text annotation
HL_8C91_043	poor quality numbers	No text annotation
HL_8C91_044	poor quality numbers	No text annotation
HL_8C91_045	missing nts	No text annotation
HL_8C91_047	missing nts	No text annotation
HL_8C91_048	poor quality numbers	GNRA
HL_8C91_049	poor quality numbers	Ribsomal LSU H95
HL_8C91_050	poor quality numbers	No text annotation
HL_8C91_051	poor quality numbers	Mini UNCG
HL_8C91_052	poor quality numbers	No text annotation

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
IL_8C91_001	1/A/24:30, 1/A/510:516	Triple sheared with non-canonical cWW	homologous IL_7RQB_001 NA
IL_8C91_002	1/A/36:37, 1/A/442:444	Single bulged A	homologous IL_4WF9_002 IL_14190.1
IL_8C91_003	1/A/43:44, 1/A/434:436	Minor groove platform	homologous IL_5J7L_247 NA
IL_8C91_071	1/A/82:85, 1/A/97:104	No text annotation
IL_8C91_006	1/A/188:194, 1/A/201:208	8x7 Sarcin-Ricin; G-bulge	homologous IL_7A0S_006 IL_62167.1
IL_8C91_011	1/A/481:484, 1/A/496:509	No text annotation	geometric IL_5J7L_255 NA
IL_8C91_013	1/A/564:566, 1/A/575:577	Isolated non-canonical cWW pair	geometric IL_4E48_005 IL_01003.1
IL_8C91_015	1/A/672:674, 1/A/806:808	Isolated non-canonical cWW pair	homologous IL_7A0S_014 IL_01003.1
IL_8C91_017	1/A/697:698, 1/A/763:765	Single bulged A	geometric IL_7A0S_016 IL_14190.1
IL_8C91_027	1/A/998:1002, 1/A/1153:1157	UAA/GAN	homologous IL_4WF9_036 IL_08938.1
IL_8C91_028	1/A/1004:1011, 1/A/1150:1151	SSU/LSU pseudoknot	homologous IL_4WF9_037 IL_11411.1
IL_8C91_031	1/A/1196:1198, 1/A/1247:1250	Isolated cWS basepair	homologous IL_7A0S_041 IL_42997.4
IL_8C91_074	1/A/1208:1215, 1/A/1234:1238	Kink-turn	homologous IL_5J7L_288 NA
IL_8C91_034	1/A/1262:1269, 1/A/2011:2017	8x7 Sarcin-Ricin; G-bulge	homologous IL_5J7L_289 NA
IL_8C91_080	1/A/1319:1323, 1/A/1331:1333	C-loop	homologous IL_5J7L_291 NA
IL_8C91_045	1/A/1468:1471, 1/A/1520:1524	No text annotation	homologous IL_5J7L_299 NA
IL_8C91_077	1/A/1474:1478, 1/A/1513:1517	tSH-tHW-tHS	homologous IL_5J7L_300 NA
IL_8C91_081	1/A/1663:1665, 1/A/1995:1997	Isolated tWW turn	homologous IL_4WF9_063 IL_10432.1
IL_8C91_054	1/A/1712:1718, 1/A/1742:1746	6x5 Sarcin-Ricin; G-bulge	homologous IL_5J7L_309 NA
IL_8C91_059	1/A/2053:2056, 1/A/2612:2616	No text annotation
IL_8C91_060	1/A/2636:2640, 1/A/2774:2782	tSH-tHS-tHW	homologous IL_7RQB_102 NA
IL_8C91_063	1/A/2687:2691, 1/A/2718:2722	UAA/GAN related, with intercalation	homologous IL_5J7L_348 NA
IL_8C91_064	1/A/2695:2696, 1/A/2711:2714	Multiple bulged bases	homologous IL_4WF9_103 IL_44609.1
IL_8C91_067	1/A/2806:2811, 1/A/2889:2892	No text annotation	geometric IL_5J7L_351 NA
IL_8C91_069	1/A/2843:2846, 1/A/2870:2874	Multiple bulged bases with non-canonical cWW	homologous IL_5J7L_353 NA

Problematic loops

loop id	Problem	Sequence
IL_8C91_004	Deprecated	No text annotation
IL_8C91_005	poor quality numbers	Single stack bend
IL_8C91_007	poor quality numbers	7x6 Sarcin-Ricin; G-bulge
IL_8C91_008	poor quality numbers	No text annotation
IL_8C91_009	poor quality numbers	No text annotation
IL_8C91_010	poor quality numbers	No text annotation
IL_8C91_012	poor quality numbers	Double sheared
IL_8C91_014	Deprecated	No text annotation
IL_8C91_072	poor quality numbers	AAA cross-strand stack
IL_8C91_016	poor quality numbers	No text annotation
IL_8C91_018	poor quality numbers	No text annotation
IL_8C91_019	poor quality numbers	Major groove platform
IL_8C91_020	poor quality numbers	Multiple bulged bases
IL_8C91_021	poor quality numbers	90 degree turn
IL_8C91_073	poor quality numbers	No text annotation
IL_8C91_022	poor quality numbers	Multiple bulged bases
IL_8C91_023	poor quality numbers	Single stack bend
IL_8C91_024	poor quality numbers	No text annotation
IL_8C91_025	poor quality numbers	Single stack bend
IL_8C91_026	poor quality numbers	Single bulged C
IL_8C91_029	poor quality numbers	Single bulged U
IL_8C91_030	poor quality numbers	No text annotation
IL_8C91_032	poor quality numbers	No text annotation
IL_8C91_033	Deprecated	No text annotation
IL_8C91_035	poor quality numbers	Major groove platform; stack outside cWW
IL_8C91_036	Deprecated	No text annotation
IL_8C91_037	poor quality numbers	No text annotation
IL_8C91_075	poor quality numbers	UAA/GAN
IL_8C91_038	poor quality numbers	No text annotation
IL_8C91_039	poor quality numbers	tSH-tHW-tHS
IL_8C91_040	poor quality numbers	No text annotation
IL_8C91_041	poor quality numbers	UAA/GAN
IL_8C91_076	Deprecated	UAA/GAN with extra cWW
IL_8C91_042	poor quality numbers	Tandem non-canonical cWW pairs
IL_8C91_043	poor quality numbers	tSH-tHW
IL_8C91_044	poor quality numbers	Single bulged U
IL_8C91_046	Deprecated	No text annotation
IL_8C91_047	poor quality numbers	180 degree turn
IL_8C91_048	poor quality numbers	Single bulged A
IL_8C91_049	poor quality numbers	UAA/GAN variation
IL_8C91_050	poor quality numbers	No text annotation
IL_8C91_051	Deprecated	No text annotation
IL_8C91_052	poor quality numbers	Major groove platform; stack outside cWW
IL_8C91_078	poor quality numbers	No text annotation
IL_8C91_053	poor quality numbers	Intercalated tWH
IL_8C91_055	poor quality numbers	No text annotation
IL_8C91_056	poor quality numbers	Single bulged A
IL_8C91_057	poor quality numbers	Kink-turn related
IL_8C91_058	poor quality numbers	Major groove platform
IL_8C91_061	poor quality numbers	Sarcin-Ricin target in LSU H95; G-bulge
IL_8C91_062	poor quality numbers	C-loop
IL_8C91_079	Deprecated	No text annotation
IL_8C91_065	poor quality numbers	UAA/GAN with extra cWW
IL_8C91_066	poor quality numbers	Single bulged A
IL_8C91_068	poor quality numbers	Major groove intercalation
IL_8C91_070	poor quality numbers	tHS double platform

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
J3_8C91_001	1/A/30:32, 1/A/474:481, 1/A/509:510	No text annotation
J3_8C91_010	1/A/297:301, 1/A/316:325, 1/A/337:341	No text annotation	homologous J3_5J7L_068 NA
J3_8C91_005	1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642	No text annotation	homologous J3_5J7L_041 NA
J3_8C91_006	1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622	No text annotation	homologous J3_7A0S_007 J3_47341.1
J3_8C91_007	1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403	No text annotation	homologous J3_5J7L_043 NA
J3_8C91_012	1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574	No text annotation	homologous J3_7A0S_019 J3_34864.3
J3_8C91_008	1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894	No text annotation	homologous J3_5J7L_047 NA
J3_8C91_009	1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888	No text annotation	homologous J3_5J7L_048 NA
J4_8C91_001	1/A/30:35, 1/A/445:461, 1/A/468:481, 1/A/509:510	No text annotation
J4_8C91_003	1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341	No text annotation	homologous J4_5J7L_019 NA
J4_8C91_005	1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010	No text annotation	homologous J4_5J7L_021 NA
J4_8C91_006	1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604	No text annotation	homologous J4_5J7L_022 NA
J4_8C91_007	1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603	No text annotation	homologous J4_5J7L_023 NA
J5_8C91_005	1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178	No text annotation
J5_8C91_002	1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018	No text annotation	homologous J5_5J7L_014 NA
J5_8C91_003	1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256	No text annotation	homologous J5_5J7L_015 NA
J5_8C91_004	1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990	No text annotation	homologous J5_5J7L_016 NA
J7_8C91_001	1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895	No text annotation
J7_8C91_002	1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190	No text annotation

Problematic loops

loop id	Problem	Sequence
J3_8C91_002	poor quality numbers	No text annotation
J3_8C91_003	poor quality numbers	No text annotation
J3_8C91_004	poor quality numbers	No text annotation
J3_8C91_011	Deprecated	No text annotation
J4_8C91_002	poor quality numbers	No text annotation
J4_8C91_004	poor quality numbers	No text annotation
J4_8C91_008	poor quality numbers	No text annotation
J4_8C91_009	poor quality numbers	No text annotation
J4_8C91_010	poor quality numbers	No text annotation
J5_8C91_001	Deprecated	No text annotation
J6_8C91_001	poor quality numbers	No text annotation

Coloring options: Nucleotide numbers

8C91 Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops