HL_8C93_012

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8C93|1|A|G|386, 8C93|1|A|G|389

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_012 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.282

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8C93|1|A|A|382
8C93|1|A|C|383
8C93|1|A|A|384
8C93|1|A|C|385
8C93|1|A|G|386
8C93|1|A|U|387
8C93|1|A|G|388
8C93|1|A|G|389
8C93|1|A|U|390
8C93|1|A|A|391
8C93|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains