RNA 3D Hub //

8C93 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8C93_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_8C93_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_8C93_0091/A/305:312T-loop with 2 stacked bulged bases
homologous
HL_4WF9_010
HL_13999.2
HL_8C93_0101/A/319:323No text annotation
homologous
HL_7RQB_011
NA
HL_8C93_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_8C93_0141/A/462:467GNRA
homologous
HL_4WF9_015
HL_34789.2
HL_8C93_0271/A/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_8C93_0291/A/1324:1330Externally structured
geometric
HL_8C3A_022
NA
HL_8C93_0311/A/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_8C93_0381/A/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_8C93_0401/A/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2

Problematic loops

#loop idProblemSequence
HL_8C93_002No text annotation
HL_8C93_004Mini UNCG
HL_8C93_005No text annotation
HL_8C93_006No text annotation
HL_8C93_007No text annotation
HL_8C93_008No text annotation
HL_8C93_012No text annotation
HL_8C93_013GNRA wlth tandem sheared
HL_8C93_045tRNA anticodon loop
HL_8C93_015GNRA
HL_8C93_016No text annotation
HL_8C93_046No text annotation
HL_8C93_017No text annotation
HL_8C93_018No text annotation
HL_8C93_019No text annotation
HL_8C93_020No text annotation
HL_8C93_021No text annotation
HL_8C93_047No text annotation
HL_8C93_022No text annotation
HL_8C93_023No text annotation
HL_8C93_024GNRA
HL_8C93_025No text annotation
HL_8C93_026Externally structured
HL_8C93_028T-loop with 2 stacked bulged bases
HL_8C93_030GNRA
HL_8C93_032Mini UNCG
HL_8C93_033No text annotation
HL_8C93_034UNCG
HL_8C93_035Mini UNCG
HL_8C93_036No text annotation
HL_8C93_037GNRA
HL_8C93_039No text annotation
HL_8C93_041No text annotation
HL_8C93_042Mini UNCG
HL_8C93_043No text annotation
HL_8C93_044GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8C93_0011/A/24:30,
1/A/510:516		Triple sheared with non-canonical cWW
homologous
IL_4WF9_001
IL_22311.1
IL_8C93_0031/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_4WF9_002
IL_14190.2
IL_8C93_0611/A/82:85,
1/A/97:104		No text annotation
IL_8C93_0071/A/188:194,
1/A/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_006
IL_62167.2
IL_8C93_0121/A/481:484,
1/A/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_8C93_0631/A/606:610,
1/A/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_8C93_0231/A/994:996,
1/A/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_8C93_0241/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_8C93_0251/A/1004:1011,
1/A/1150:1151		SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_11411.1
IL_8C93_0291/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.5
IL_8C93_0301/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_8C93_0681/A/1208:1215,
1/A/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_8C93_0451/A/1526:1529,
1/A/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_8C93_0481/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.4
IL_8C93_0531/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_8C93_0711/A/2847:2852,
1/A/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA

Problematic loops

#loop idProblemSequence
IL_8C93_002Single stack bend
IL_8C93_004Minor groove platform
IL_8C93_005No text annotation
IL_8C93_006No text annotation
IL_8C93_0087x6 Sarcin-Ricin; G-bulge
IL_8C93_009No text annotation
IL_8C93_010No text annotation
IL_8C93_062No text annotation
IL_8C93_011No text annotation
IL_8C93_013Double sheared
IL_8C93_014Isolated non-canonical cWW pair
IL_8C93_015No text annotation
IL_8C93_016Isolated non-canonical cWW pair
IL_8C93_017tHW-tHW cross-strand stack
IL_8C93_01890 degree turn
IL_8C93_064No text annotation
IL_8C93_019Stack outside cWW
IL_8C93_020Single stack bend
IL_8C93_0217x7 Sarcin-Ricin with intercalated A; G-bulge
IL_8C93_022Single bulged G
IL_8C93_026Single bulged U
IL_8C93_027Kink-turn related
IL_8C93_028No text annotation
IL_8C93_031No text annotation
IL_8C93_032Major groove platform; stack outside cWW
IL_8C93_033Single stack bend
IL_8C93_069No text annotation
IL_8C93_034No text annotation
IL_8C93_035UAA/GAN
IL_8C93_036tSH-tHW-tHS
IL_8C93_037No text annotation
IL_8C93_070No text annotation
IL_8C93_038Tandem non-canonical cWW pairs
IL_8C93_039tSH-tHW
IL_8C93_040Single bulged U
IL_8C93_041No text annotation
IL_8C93_0425x5 Sarcin-Ricin with intercalated A; G-bulge
IL_8C93_043No text annotation
IL_8C93_065180 degree turn
IL_8C93_044Single bulged A
IL_8C93_046Major groove platform
IL_8C93_047No text annotation
IL_8C93_049No text annotation
IL_8C93_050No text annotation
IL_8C93_051Sarcin-Ricin target in LSU H95; G-bulge
IL_8C93_052C-loop
IL_8C93_054Intercalated cWW
IL_8C93_066Multiple bulged bases
IL_8C93_055UAA/GAN with extra cWW
IL_8C93_056Single bulged A
IL_8C93_057No text annotation
IL_8C93_058Major groove intercalation
IL_8C93_059Multiple bulged bases with non-canonical cWW
IL_8C93_060No text annotation
IL_8C93_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8C93_0091/A/31:35,
1/A/445:461,
1/A/468:474		No text annotation
J3_8C93_0021/A/33:35,
1/A/445:461,
1/A/468:473		No text annotation
J3_8C93_0031/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_8C93_0121/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J4_8C93_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_8C93_0041/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_8C93_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_8C93_0061/A/1444:1445,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J5_8C93_0041/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:151,
1/A/175:178		No text annotation
J5_8C93_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_8C93_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_4WF9_004
J5_74302.6
J7_8C93_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_8C93_0021/A/817:822,
1/A/835:838,
1/A/940:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8C93_001No text annotation
J3_8C93_004No text annotation
J3_8C93_011No text annotation
J3_8C93_005No text annotation
J3_8C93_006No text annotation
J3_8C93_010No text annotation
J3_8C93_007No text annotation
J3_8C93_008No text annotation
J4_8C93_001No text annotation
J4_8C93_008No text annotation
J4_8C93_003No text annotation
J4_8C93_009No text annotation
J4_8C93_007No text annotation
J5_8C93_001No text annotation
J6_8C93_001No text annotation

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