HL_8C93_023

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GCACCAAAC

Length

9 nucleotides

Bulged bases

8C93|1|A|A|910, 8C93|1|A|A|911

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_023 not in the Motif Atlas

Geometric match to HL_8UO6_007

Geometric discrepancy: 0.3851

The information below is about HL_8UO6_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8C93|1|A|G|864
8C93|1|A|C|865
8C93|1|A|A|866
8C93|1|A|C|867
8C93|1|A|C|908
8C93|1|A|A|909
8C93|1|A|A|910
8C93|1|A|A|911
8C93|1|A|C|912

Current chains

Chain A

23S rRNA

Nearby chains