HL_8C93_032

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8C93|1|A|A|1453, 8C93|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_032 not in the Motif Atlas

Geometric match to HL_5SWD_005

Geometric discrepancy: 0.0989

The information below is about HL_5SWD_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8C93|1|A|C|1451
8C93|1|A|G|1452
8C93|1|A|A|1453
8C93|1|A|C|1454
8C93|1|A|G|1455
8C93|1|A|G|1456
8C93|1|A|U|1457
8C93|1|A|U|1458
8C93|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17