HL_8C93_040

3D structure

PDB id

8C93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C93_040 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.2528

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8C93|1|A|U|2701
8C93|1|A|G|2702
8C93|1|A|C|2703
8C93|1|A|C|2704
8C93|1|A|A|2705
8C93|1|A|A|2706

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17