HL_8C94_004

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_004 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3323

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8C94|1|A|G|136
8C94|1|A|U|137
8C94|1|A|U|138
8C94|1|A|U|139
8C94|1|A|C|140
8C94|1|A|G|141
8C94|1|A|A|142
8C94|1|A|C|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L29