8C94 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C94_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_8C94_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_8C94_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_8C94_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_13999.1 | |
| HL_8C94_010 | 1/A/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8C94_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8C94_014 | 1/A/462:467 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_8C94_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases | geometric HL_1U0B_003 HL_33597.1 | |
| HL_8C94_018 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_8C94_020 | 1/A/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8C94_025 | 1/A/978:985 | No text annotation | homologous HL_7A0S_027 HL_47171.1 | |
| HL_8C94_028 | 1/A/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_8C94_029 | 1/A/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_8C94_033 | 1/A/2027:2036 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8C94_034 | 1/A/2264:2276 | No text annotation | homologous HL_7A0S_053 HL_02042.1 | |
| HL_8C94_038 | 1/A/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_8C94_044 | 1/A/2819:2827 | No text annotation | homologous HL_7RQB_068 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C94_001 | No text annotation | ||
| HL_8C94_004 | UNCG variation | ||
| HL_8C94_005 | No text annotation | ||
| HL_8C94_006 | No text annotation | ||
| HL_8C94_008 | No text annotation | ||
| HL_8C94_012 | No text annotation | ||
| HL_8C94_013 | Pseudoknot geometry | ||
| HL_8C94_015 | GNRA | ||
| HL_8C94_016 | No text annotation | ||
| HL_8C94_019 | GNRA | ||
| HL_8C94_021 | No text annotation | ||
| HL_8C94_022 | No text annotation | ||
| HL_8C94_048 | No text annotation | ||
| HL_8C94_023 | Externally structured | ||
| HL_8C94_024 | GNRA | ||
| HL_8C94_026 | No text annotation | ||
| HL_8C94_027 | Mini UNCG | ||
| HL_8C94_030 | No text annotation | ||
| HL_8C94_031 | GNRA | ||
| HL_8C94_032 | No text annotation | ||
| HL_8C94_035 | No text annotation | ||
| HL_8C94_036 | Pseudoknot geometry | ||
| HL_8C94_037 | GNRA | ||
| HL_8C94_039 | No text annotation | ||
| HL_8C94_040 | GNRA | ||
| HL_8C94_041 | Ribsomal LSU H95 | ||
| HL_8C94_042 | No text annotation | ||
| HL_8C94_043 | Mini UNCG | ||
| HL_8C94_045 | GNRA | ||
| HL_8C94_046 | No text annotation | ||
| HL_8C94_047 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C94_002 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_8C94_003 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8C94_004 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8C94_059 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_8C94_007 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.1 | |
| IL_8C94_008 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8C94_012 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8C94_013 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_7A0S_009 IL_44923.1 | |
| IL_8C94_014 | 1/A/536:539, 1/A/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8C94_015 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_8C94_016 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_8C94_017 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
| IL_8C94_018 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_8C94_019 | 1/A/844:847, 1/A/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_8C94_061 | 1/A/844:848, 1/A/930:934 | No text annotation | geometric IL_5J7L_399 NA | |
| IL_8C94_020 | 1/A/847:848, 1/A/930:933 | Multiple bulged bases | geometric IL_5XWP_001 IL_71421.1 | |
| IL_8C94_021 | 1/A/850:851, 1/A/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_8C94_022 | 1/A/854:856, 1/A/922:923 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_8C94_027 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8C94_028 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_8C94_029 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_11411.1 | |
| IL_8C94_031 | 1/A/1018:1024, 1/A/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_8C94_034 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.4 | |
| IL_8C94_035 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_8C94_062 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8C94_037 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8C94_038 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_8C94_039 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_8C94_040 | 1/A/2053:2057, 1/A/2611:2616 | No text annotation | ||
| IL_8C94_041 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8C94_043 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8C94_045 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_5J7L_347 NA | |
| IL_8C94_046 | 1/A/2687:2691, 1/A/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_8C94_047 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8C94_048 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_8C94_050 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation | geometric IL_5J7L_351 NA | |
| IL_8C94_051 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation | homologous IL_4WF9_106 IL_78536.1 | |
| IL_8C94_052 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_8C94_063 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_8C94_058 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C94_001 | Single stack bend | ||
| IL_8C94_005 | No text annotation | ||
| IL_8C94_006 | No text annotation | ||
| IL_8C94_009 | No text annotation | ||
| IL_8C94_010 | Single stack bend | ||
| IL_8C94_060 | No text annotation | ||
| IL_8C94_011 | No text annotation | ||
| IL_8C94_023 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_8C94_024 | Single bulged G | ||
| IL_8C94_025 | C-loop | ||
| IL_8C94_026 | Isolated non-canonical cWW pair | ||
| IL_8C94_030 | Single bulged U | ||
| IL_8C94_032 | No text annotation | ||
| IL_8C94_033 | Isolated non-canonical cWW pair | ||
| IL_8C94_036 | No text annotation | ||
| IL_8C94_042 | No text annotation | ||
| IL_8C94_044 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8C94_049 | Single bulged A | ||
| IL_8C94_053 | No text annotation | ||
| IL_8C94_054 | Major groove intercalation | ||
| IL_8C94_055 | No text annotation | ||
| IL_8C94_064 | No text annotation | ||
| IL_8C94_056 | No text annotation | ||
| IL_8C94_057 | Symmetric double minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C94_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_8C94_009 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_8C94_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8C94_003 | 1/A/1298:1303, 1/A/1625:1629, 1/A/1637:1642 | No text annotation | ||
| J3_8C94_004 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_8C94_006 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_8C94_007 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J4_8C94_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_8C94_003 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8C94_005 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J5_8C94_004 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J5_8C94_002 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_8C94_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J6_8C94_001 | 1/A/45:46, 1/A/179:183, 1/A/215:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J7_8C94_001 | 1/A/8:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2895 | No text annotation | ||
| J7_8C94_002 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8C94_005 | No text annotation | ||
| J3_8C94_010 | No text annotation | ||
| J3_8C94_008 | No text annotation | ||
| J4_8C94_001 | No text annotation | ||
| J4_8C94_004 | No text annotation | ||
| J5_8C94_001 | No text annotation |
Coloring options: