HL_8C94_017

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8C94|1|A|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_017 not in the Motif Atlas

Geometric match to HL_1U0B_003

Geometric discrepancy: 0.3624

The information below is about HL_1U0B_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8C94|1|A|U|566
8C94|1|A|U|567
8C94|1|A|U|568
8C94|1|A|U|569
8C94|1|A|G|570
8C94|1|A|U|571
8C94|1|A|A|572
8C94|1|A|U|573
8C94|1|A|A|574
8C94|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain R

50S ribosomal protein L21