HL_8C94_018

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

8C94|1|A|A|614, 8C94|1|A|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_018 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.2302

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8C94|1|A|C|611
8C94|1|A|G|612
8C94|1|A|A|613
8C94|1|A|A|614
8C94|1|A|U|615
8C94|1|A|A|616
8C94|1|A|G|617

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4