3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUAUG
Length
6 nucleotides
Bulged bases
8C94|1|A|U|1174, 8C94|1|A|A|1175
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C94_027 not in the Motif Atlas
Geometric match to HL_4YAZ_004
Geometric discrepancy: 0.1686
The information below is about HL_4YAZ_004
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

8C94|1|A|C|1172
8C94|1|A|U|1173
8C94|1|A|U|1174
8C94|1|A|A|1175
8C94|1|A|U|1176
8C94|1|A|G|1177

Current chains

Chain A
23S rRNA

Nearby chains

Chain L
50S ribosomal protein L15

Coloring options:


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