3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UCGGGUGAAGGAACA
Length
15 nucleotides
Bulged bases
8C94|1|A|G|1663
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C94_032 not in the Motif Atlas
Geometric match to HL_4WF9_003
Geometric discrepancy: 0.1494
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

8C94|1|A|U|1657
8C94|1|A|C|1658
8C94|1|A|G|1659
8C94|1|A|G|1660
8C94|1|A|G|1661
8C94|1|A|U|1662
8C94|1|A|G|1663
8C94|1|A|A|1664
8C94|1|A|A|1665
8C94|1|A|G|1666
8C94|1|A|G|1667
8C94|1|A|A|1668
8C94|1|A|A|1669
8C94|1|A|C|1670
8C94|1|A|A|2003

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain N
50S ribosomal protein L17
Chain P
50S ribosomal protein L19

Coloring options:


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