HL_8C94_044

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8C94|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C94_044 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1818

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8C94|1|A|G|2819
8C94|1|A|A|2820
8C94|1|A|A|2821
8C94|1|A|G|2822
8C94|1|A|A|2823
8C94|1|A|C|2824
8C94|1|A|G|2825
8C94|1|A|A|2826
8C94|1|A|C|2827

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17