HL_8C95_017

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8C95|1|A|A|572, 8C95|1|A|A|574

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C95_017 not in the Motif Atlas

Geometric match to HL_4O26_001

Geometric discrepancy: 0.2641

The information below is about HL_4O26_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53014.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

8C95|1|A|U|566
8C95|1|A|U|567
8C95|1|A|U|568
8C95|1|A|U|569
8C95|1|A|G|570
8C95|1|A|U|571
8C95|1|A|A|572
8C95|1|A|U|573
8C95|1|A|A|574
8C95|1|A|A|575

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L21