8C95 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C95_011 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C95_001 | No text annotation | ||
| HL_8C95_002 | No text annotation | ||
| HL_8C95_003 | No text annotation | ||
| HL_8C95_004 | Externally structured | ||
| HL_8C95_005 | No text annotation | ||
| HL_8C95_006 | No text annotation | ||
| HL_8C95_007 | No text annotation | ||
| HL_8C95_008 | No text annotation | ||
| HL_8C95_009 | T-loop with 2 stacked bulged bases | ||
| HL_8C95_010 | No text annotation | ||
| HL_8C95_012 | No text annotation | ||
| HL_8C95_039 | No text annotation | ||
| HL_8C95_013 | Pseudoknot geometry | ||
| HL_8C95_014 | No text annotation | ||
| HL_8C95_015 | GNRA | ||
| HL_8C95_016 | No text annotation | ||
| HL_8C95_017 | No text annotation | ||
| HL_8C95_018 | No text annotation | ||
| HL_8C95_019 | GNRA | ||
| HL_8C95_020 | No text annotation | ||
| HL_8C95_040 | No text annotation | ||
| HL_8C95_021 | No text annotation | ||
| HL_8C95_022 | No text annotation | ||
| HL_8C95_023 | No text annotation | ||
| HL_8C95_024 | GNRA | ||
| HL_8C95_025 | No text annotation | ||
| HL_8C95_026 | No text annotation | ||
| HL_8C95_041 | No text annotation | ||
| HL_8C95_027 | Mini UNCG | ||
| HL_8C95_028 | GNRA | ||
| HL_8C95_029 | No text annotation | ||
| HL_8C95_030 | No text annotation | ||
| HL_8C95_031 | No text annotation | ||
| HL_8C95_032 | No text annotation | ||
| HL_8C95_033 | Pseudoknot geometry | ||
| HL_8C95_034 | GNRA | ||
| HL_8C95_035 | GNRA | ||
| HL_8C95_036 | No text annotation | ||
| HL_8C95_037 | No text annotation | ||
| HL_8C95_038 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C95_023 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C95_001 | Triple sheared with non-canonical cWW | ||
| IL_8C95_002 | Single bulged A | ||
| IL_8C95_003 | Minor groove platform | ||
| IL_8C95_004 | No text annotation | ||
| IL_8C95_037 | No text annotation | ||
| IL_8C95_005 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C95_006 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8C95_007 | No text annotation | ||
| IL_8C95_008 | No text annotation | ||
| IL_8C95_009 | No text annotation | ||
| IL_8C95_043 | No text annotation | ||
| IL_8C95_038 | No text annotation | ||
| IL_8C95_010 | No text annotation | ||
| IL_8C95_011 | Double sheared with non-canonical cWW | ||
| IL_8C95_012 | Isolated non-canonical cWW pair | ||
| IL_8C95_013 | No text annotation | ||
| IL_8C95_039 | No text annotation | ||
| IL_8C95_014 | Isolated non-canonical cWW pair | ||
| IL_8C95_015 | tHW-tHW cross-strand stack | ||
| IL_8C95_016 | 90 degree turn | ||
| IL_8C95_040 | No text annotation | ||
| IL_8C95_017 | Stack outside cWW | ||
| IL_8C95_018 | Single stack bend | ||
| IL_8C95_019 | Single stack bend | ||
| IL_8C95_020 | No text annotation | ||
| IL_8C95_021 | Single bulged G | ||
| IL_8C95_022 | Single bulged C | ||
| IL_8C95_024 | SSU/LSU pseudoknot | ||
| IL_8C95_025 | Single bulged U | ||
| IL_8C95_026 | No text annotation | ||
| IL_8C95_027 | Isolated cWS basepair | ||
| IL_8C95_041 | No text annotation | ||
| IL_8C95_044 | No text annotation | ||
| IL_8C95_028 | tSH-tHH-tHS | ||
| IL_8C95_029 | Kink-turn | ||
| IL_8C95_042 | No text annotation | ||
| IL_8C95_030 | Double sheared | ||
| IL_8C95_031 | Single bulged U | ||
| IL_8C95_032 | Major groove intercalation | ||
| IL_8C95_033 | No text annotation | ||
| IL_8C95_034 | Major groove minor groove platform; mini C-loop | ||
| IL_8C95_035 | Symmetric double minor groove platform | ||
| IL_8C95_036 | Bacterial 5S Loop E |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8C95_003 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J7_8C95_001 | 1/A/817:822, 1/A/835:838, 1/A/940:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8C95_001 | No text annotation | ||
| J3_8C95_005 | No text annotation | ||
| J3_8C95_002 | No text annotation | ||
| J3_8C95_003 | No text annotation | ||
| J3_8C95_004 | No text annotation | ||
| J4_8C95_001 | No text annotation | ||
| J4_8C95_002 | No text annotation | ||
| J4_8C95_003 | No text annotation | ||
| J5_8C95_001 | No text annotation | ||
| J5_8C95_002 | No text annotation | ||
| J6_8C95_001 | No text annotation |
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