HL_8C95_031

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8C95|1|A|A|2268, 8C95|1|A|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C95_031 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3129

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8C95|1|A|C|2264
8C95|1|A|U|2265
8C95|1|A|A|2266
8C95|1|A|A|2267
8C95|1|A|A|2268
8C95|1|A|G|2269
8C95|1|A|A|2270
8C95|1|A|G|2271
8C95|1|A|U|2272
8C95|1|A|A|2273
8C95|1|A|A|2274
8C95|1|A|C|2275
8C95|1|A|G|2276

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27