HL_8C96_006

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8C96|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C96_006 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3638

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8C96|1|A|G|194
8C96|1|A|A|195
8C96|1|A|A|196
8C96|1|A|A|197
8C96|1|A|C|198
8C96|1|A|A|199
8C96|1|A|U|200
8C96|1|A|C|201

Current chains

Chain A

23S rRNA

Nearby chains