RNA 3D Hub //

8C96 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

No loops found

Problematic loops

#loop idProblemSequence
HL_8C96_001No text annotation
HL_8C96_039No text annotation
HL_8C96_002No text annotation
HL_8C96_003No text annotation
HL_8C96_004No text annotation
HL_8C96_005No text annotation
HL_8C96_006No text annotation
HL_8C96_040No text annotation
HL_8C96_007No text annotation
HL_8C96_008No text annotation
HL_8C96_009T-loop with 2 stacked bulged bases
HL_8C96_010No text annotation
HL_8C96_011T-loop with unstacked turn
HL_8C96_012No text annotation
HL_8C96_041No text annotation
HL_8C96_013No text annotation
HL_8C96_014GNRA
HL_8C96_015GNRA
HL_8C96_016No text annotation
HL_8C96_017No text annotation
HL_8C96_018No text annotation
HL_8C96_019No text annotation
HL_8C96_020GNRA
HL_8C96_021No text annotation
HL_8C96_022No text annotation
HL_8C96_023GNRA
HL_8C96_024No text annotation
HL_8C96_025Externally structured
HL_8C96_026GNRA
HL_8C96_027T-loop with 2 stacked bulged bases
HL_8C96_028Mini UNCG
HL_8C96_029GNRA
HL_8C96_030No text annotation
HL_8C96_031No text annotation
HL_8C96_032No text annotation
HL_8C96_033GNRA
HL_8C96_034Ribsomal LSU H95
HL_8C96_035No text annotation
HL_8C96_036Mini UNCG
HL_8C96_037No text annotation
HL_8C96_038No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8C96_0021/A/36:37,
1/A/442:444		Single bulged A
homologous
IL_4WF9_002
IL_14190.1
IL_8C96_0251/A/998:1002,
1/A/1153:1157		UAA/GAN
homologous
IL_5J7L_277
NA
IL_8C96_0261/A/1004:1011,
1/A/1150:1151		Multiple bulged bases
geometric
IL_1R3E_001
IL_44609.1
IL_8C96_0271/A/1011:1013,
1/A/1149:1150		Single bulged U
homologous
IL_5J7L_279
NA
IL_8C96_0291/A/1024:1030,
1/A/1124:1140		No text annotation
homologous
IL_4WF9_040
IL_50715.4
IL_8C96_0301/A/1196:1198,
1/A/1247:1250		Isolated cWS basepair
homologous
IL_7A0S_041
IL_42997.4
IL_8C96_0311/A/1202:1206,
1/A/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_8C96_0321/A/1208:1216,
1/A/1233:1238		No text annotation
IL_8C96_0341/A/1651:1656,
1/A/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_8C96_0371/A/2636:2640,
1/A/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_8C96_0401/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_8C96_0461/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA

Problematic loops

#loop idProblemSequence
IL_8C96_001Triple sheared with non-canonical cWW
IL_8C96_003Minor groove platform
IL_8C96_004No text annotation
IL_8C96_048Kink-turn
IL_8C96_005Major groove platform with intercalation
IL_8C96_0068x7 Sarcin-Ricin; G-bulge
IL_8C96_007No text annotation
IL_8C96_008No text annotation
IL_8C96_009No text annotation
IL_8C96_010No text annotation
IL_8C96_011No text annotation
IL_8C96_012Double sheared
IL_8C96_013Isolated non-canonical cWW pair
IL_8C96_014AAA cross-strand stack
IL_8C96_015Single stack bend
IL_8C96_016No text annotation
IL_8C96_017No text annotation
IL_8C96_018Single stack bend
IL_8C96_01990 degree turn
IL_8C96_049No text annotation
IL_8C96_020Stack outside cWW
IL_8C96_021Single stack bend
IL_8C96_0227x7 Sarcin-Ricin with intercalated A; G-bulge
IL_8C96_023Minor groove platform
IL_8C96_024Single bulged C
IL_8C96_028Kink-turn related
IL_8C96_0338x7 Sarcin-Ricin; G-bulge
IL_8C96_035No text annotation
IL_8C96_036Major groove platform
IL_8C96_038No text annotation
IL_8C96_039C-loop
IL_8C96_041Intercalated cWW
IL_8C96_050Multiple bulged bases
IL_8C96_042UAA/GAN with extra cWW
IL_8C96_051Isolated near basepair
IL_8C96_043Single bulged A
IL_8C96_044No text annotation
IL_8C96_045Major groove intercalation
IL_8C96_047tHS double platform

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8C96_0061/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_8C96_0071/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J5_8C96_0021/A/531:533,
1/A/560:564,
1/A/577:579,
1/A/1261:1262,
1/A/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_8C96_0031/A/584:589,
1/A/668:671,
1/A/809:812,
1/A/1195:1196,
1/A/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J7_8C96_0011/A/8:15,
1/A/525:531,
1/A/2018:2023,
1/A/2040:2043,
1/A/2625:2630,
1/A/2788:2789,
1/A/2894:2895		No text annotation
J7_8C96_0021/A/817:822,
1/A/835:837,
1/A/942:946,
1/A/971:976,
1/A/987:991,
1/A/1163:1164,
1/A/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8C96_001No text annotation
J3_8C96_002No text annotation
J3_8C96_003No text annotation
J3_8C96_004No text annotation
J3_8C96_005No text annotation
J4_8C96_001No text annotation
J4_8C96_006No text annotation
J4_8C96_002No text annotation
J4_8C96_003No text annotation
J4_8C96_004No text annotation
J4_8C96_005No text annotation
J4_8C96_007No text annotation
J5_8C96_004No text annotation
J5_8C96_001No text annotation
J6_8C96_001No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.0935 s