HL_8C96_028

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8C96|1|A|A|1453, 8C96|1|A|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C96_028 not in the Motif Atlas

Geometric match to HL_5U30_001

Geometric discrepancy: 0.1395

The information below is about HL_5U30_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8C96|1|A|C|1451
8C96|1|A|G|1452
8C96|1|A|A|1453
8C96|1|A|C|1454
8C96|1|A|G|1455
8C96|1|A|G|1456
8C96|1|A|U|1457
8C96|1|A|U|1458
8C96|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17