HL_8C97_015

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CGGCGAGG

Length

8 nucleotides

Bulged bases

8C97|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C97_015 not in the Motif Atlas

Homologous match to HL_7A0S_016

Geometric discrepancy: 0.4461

The information below is about HL_7A0S_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8C97|1|A|C|487
8C97|1|A|G|488
8C97|1|A|G|489
8C97|1|A|C|490
8C97|1|A|G|491
8C97|1|A|A|492
8C97|1|A|G|493
8C97|1|A|G|494

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22