RNA 3D Hub //

8C97 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8C97_0011/A/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_8C97_0021/A/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_8C97_0031/A/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_8C97_0091/A/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_8C97_0101/A/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_8C97_0111/A/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_8C97_0151/A/487:494GNRA
homologous
HL_7A0S_016
HL_34789.3
HL_8C97_0191/A/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_8C97_0201/A/1324:1330Mini UNCG
geometric
HL_5SWD_005
HL_90436.3
HL_8C97_0221/A/1389:1398No text annotation
HL_8C97_0231/A/1451:1459No text annotation
geometric
HL_5TBW_004
NA
HL_8C97_0281/A/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_8C97_0311/A/2701:2706Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.2

Problematic loops

#loop idProblemSequence
HL_8C97_004No text annotation
HL_8C97_005No text annotation
HL_8C97_006No text annotation
HL_8C97_007No text annotation
HL_8C97_008No text annotation
HL_8C97_012No text annotation
HL_8C97_013No text annotation
HL_8C97_014GNRA
HL_8C97_036tRNA anticodon loop
HL_8C97_016No text annotation
HL_8C97_017No text annotation
HL_8C97_018No text annotation
HL_8C97_021GNRA
HL_8C97_024No text annotation
HL_8C97_037No text annotation
HL_8C97_025UNCG
HL_8C97_026Mini UNCG
HL_8C97_038No text annotation
HL_8C97_027No text annotation
HL_8C97_029No text annotation
HL_8C97_030GNRA
HL_8C97_032No text annotation
HL_8C97_033Mini UNCG
HL_8C97_034No text annotation
HL_8C97_035GNRA

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8C97_0011/A/24:30,
1/A/510:516		No text annotation
IL_8C97_0451/A/82:85,
1/A/97:104		No text annotation
IL_8C97_0111/A/293:295,
1/A/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_8C97_0121/A/481:484,
1/A/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_8C97_0131/A/484:486,
1/A/495:496		Single stack bend
geometric
IL_5TBW_375
NA
IL_8C97_0161/A/1310:1313,
1/A/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_8C97_0241/A/1437:1440,
1/A/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_8C97_0251/A/1450:1451,
1/A/1459:1461		Single bulged U
homologous
IL_5J7L_298
NA
IL_8C97_0261/A/1468:1471,
1/A/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_8C97_0301/A/1526:1529,
1/A/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_8C97_0361/A/2678:2684,
1/A/2725:2729		No text annotation
IL_8C97_0371/A/2687:2691,
1/A/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_8C97_0381/A/2695:2696,
1/A/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_8C97_0401/A/2806:2811,
1/A/2889:2892		No text annotation
homologous
IL_5J7L_351
NA
IL_8C97_0421/A/2843:2846,
1/A/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_8C97_0521/A/2847:2852,
1/A/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA

Problematic loops

#loop idProblemSequence
IL_8C97_002Single bulged A
IL_8C97_044Minor groove platform with extra cWW
IL_8C97_003Minor groove platform
IL_8C97_004No text annotation
IL_8C97_050No text annotation
IL_8C97_005No text annotation
IL_8C97_0068x7 Sarcin-Ricin; G-bulge
IL_8C97_0077x6 Sarcin-Ricin; G-bulge
IL_8C97_008No text annotation
IL_8C97_009Single stack bend
IL_8C97_010No text annotation
IL_8C97_046No text annotation
IL_8C97_014No text annotation
IL_8C97_015Single stack bend
IL_8C97_017Single stack bend
IL_8C97_051No text annotation
IL_8C97_018No text annotation
IL_8C97_019UAA/GAN
IL_8C97_020tSH-tHW-tHS
IL_8C97_021No text annotation
IL_8C97_047No text annotation
IL_8C97_022No text annotation
IL_8C97_023Tandem non-canonical cWW pairs
IL_8C97_027tSH-tHW-tHS
IL_8C97_028180 degree turn
IL_8C97_029No text annotation
IL_8C97_0316x5 Sarcin-Ricin; G-bulge
IL_8C97_032No text annotation
IL_8C97_048No text annotation
IL_8C97_033No text annotation
IL_8C97_034tSH-tHS-tHW
IL_8C97_035Sarcin-Ricin target in LSU H95; G-bulge
IL_8C97_049Single stack bend
IL_8C97_039No text annotation
IL_8C97_041Major groove intercalation
IL_8C97_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8C97_0011/A/30:31,
1/A/474:481,
1/A/509:510		No text annotation
homologous
J3_4WF9_010
J3_68715.1
J3_8C97_0081/A/32:35,
1/A/445:461,
1/A/468:473		No text annotation
homologous
J3_9DFE_003
J3_07616.1
J3_8C97_0021/A/56:57,
1/A/70:76,
1/A/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_8C97_0031/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_8C97_0041/A/1306:1309,
1/A/1605:1612,
1/A/1620:1622		No text annotation
J3_8C97_0091/A/1306:1309,
1/A/1605:1612,
1/A/1619:1622		No text annotation
J3_8C97_0051/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_8C97_0071/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J4_8C97_0021/A/297:301,
1/A/316:319,
1/A/323:325,
1/A/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_8C97_0041/A/1310:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_8C97_0051/A/1313:1314,
1/A/1338:1343,
1/A/1404:1405,
1/A/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_8C97_0061/A/1444:1445,
1/A/1466:1467,
1/A/1525:1526,
1/A/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J5_8C97_0011/A/47:54,
1/A/116:121,
1/A/130:131,
1/A/148:151,
1/A/175:178		No text annotation

Problematic loops

#loop idProblemSequence
J3_8C97_010No text annotation
J3_8C97_006No text annotation
J4_8C97_001No text annotation
J4_8C97_008No text annotation
J4_8C97_003No text annotation
J4_8C97_007No text annotation
J6_8C97_001No text annotation

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