HL_8C98_015

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

8C98|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C98_015 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.2226

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8C98|1|A|C|487
8C98|1|A|G|488
8C98|1|A|G|489
8C98|1|A|C|490
8C98|1|A|G|491
8C98|1|A|A|492
8C98|1|A|G|493

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22