HL_8C99_004

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

8C99|1|A|U|139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C99_004 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3456

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8C99|1|A|G|136
8C99|1|A|U|137
8C99|1|A|U|138
8C99|1|A|U|139
8C99|1|A|C|140
8C99|1|A|G|141
8C99|1|A|A|142
8C99|1|A|C|143

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L29