HL_8C9B_009

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8C9B|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9B_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.3108

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8C9B|1|A|C|305
8C9B|1|A|U|306
8C9B|1|A|G|307
8C9B|1|A|G|308
8C9B|1|A|A|309
8C9B|1|A|A|310
8C9B|1|A|A|311
8C9B|1|A|G|312

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24