8C9B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C9B_001 | No text annotation | ||
| HL_8C9B_002 | No text annotation | ||
| HL_8C9B_003 | No text annotation | ||
| HL_8C9B_004 | Mini UNCG | ||
| HL_8C9B_005 | No text annotation | ||
| HL_8C9B_006 | No text annotation | ||
| HL_8C9B_007 | No text annotation | ||
| HL_8C9B_008 | No text annotation | ||
| HL_8C9B_009 | T-loop with 2 stacked bulged bases | ||
| HL_8C9B_010 | No text annotation | ||
| HL_8C9B_017 | T-loop with unstacked turn | ||
| HL_8C9B_011 | No text annotation | ||
| HL_8C9B_012 | No text annotation | ||
| HL_8C9B_013 | GNRA | ||
| HL_8C9B_014 | GNRA | ||
| HL_8C9B_015 | No text annotation | ||
| HL_8C9B_016 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C9B_001 | No text annotation | ||
| IL_8C9B_002 | Single bulged A | ||
| IL_8C9B_018 | Minor groove platform with extra cWW | ||
| IL_8C9B_003 | Minor groove platform | ||
| IL_8C9B_004 | No text annotation | ||
| IL_8C9B_019 | No text annotation | ||
| IL_8C9B_024 | Single stack bend | ||
| IL_8C9B_005 | No text annotation | ||
| IL_8C9B_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C9B_007 | Single stack bend | ||
| IL_8C9B_008 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_8C9B_020 | No text annotation | ||
| IL_8C9B_009 | No text annotation | ||
| IL_8C9B_021 | Single stack bend | ||
| IL_8C9B_010 | No text annotation | ||
| IL_8C9B_022 | No text annotation | ||
| IL_8C9B_011 | Not an internal loop | ||
| IL_8C9B_012 | No text annotation | ||
| IL_8C9B_023 | No text annotation | ||
| IL_8C9B_013 | No text annotation | ||
| IL_8C9B_025 | No text annotation | ||
| IL_8C9B_014 | No text annotation | ||
| IL_8C9B_015 | No text annotation | ||
| IL_8C9B_016 | No text annotation | ||
| IL_8C9B_017 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8C9B_001 | No text annotation | ||
| J3_8C9B_002 | No text annotation | ||
| J3_8C9B_003 | No text annotation | ||
| J3_8C9B_005 | No text annotation | ||
| J3_8C9B_004 | No text annotation | ||
| J4_8C9B_002 | No text annotation | ||
| J4_8C9B_001 | No text annotation | ||
| J5_8C9B_001 | No text annotation | ||
| J6_8C9B_001 | No text annotation |
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