HL_8C9B_013

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

8C9B|1|A|U|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9B_013 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.5224

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8C9B|1|A|C|462
8C9B|1|A|G|463
8C9B|1|A|U|464
8C9B|1|A|G|465
8C9B|1|A|A|466
8C9B|1|A|G|467

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34