HL_8CA7_001
3D structure
- PDB id
- 8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- GAUCAUCCAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CA7_001 not in the Motif Atlas
- Geometric match to HL_4ANG_001
- Geometric discrepancy: 0.3137
- The information below is about HL_4ANG_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34168.3
- Basepair signature
- cWW-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
8CA7|1|A|G|15
8CA7|1|A|A|16
8CA7|1|A|U|17
8CA7|1|A|C|18
8CA7|1|A|A|886
8CA7|1|A|U|887
8CA7|1|A|C|888
8CA7|1|A|C|889
8CA7|1|A|A|919
8CA7|1|A|U|920
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain M
- Small ribosomal subunit protein uS13
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