HL_8CAH_013
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUUCG
- Length
- 6 nucleotides
- Bulged bases
- 8CAH|1|2|U|493, 8CAH|1|2|U|494, 8CAH|1|2|C|495
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CAH_013 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.337
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8CAH|1|2|C|491
8CAH|1|2|A|492
8CAH|1|2|U|493
8CAH|1|2|U|494
8CAH|1|2|C|495
8CAH|1|2|G|496
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain j
- RNA recognition motif (unknown)
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
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