HL_8CAH_021

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAH_021 not in the Motif Atlas

Homologous match to HL_4V88_206

Geometric discrepancy: 0.1561

The information below is about HL_4V88_206

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

8CAH|1|2|A|900
8CAH|1|2|G|901
8CAH|1|2|G|902
8CAH|1|2|U|903
8CAH|1|2|G|904
8CAH|1|2|A|905
8CAH|1|2|A|906
8CAH|1|2|A|907
8CAH|1|2|U|908
8CAH|1|2|U|909

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-A

Chain e

40S ribosomal protein S26-A