HL_8CAI_005

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8CAI|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAI_005 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0569

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8CAI|1|A|G|259
8CAI|1|A|G|260
8CAI|1|A|U|261
8CAI|1|A|A|262
8CAI|1|A|A|263
8CAI|1|A|C|264
8CAI|1|A|G|265
8CAI|1|A|G|266
8CAI|1|A|C|267

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

30S ribosomal protein S20