HL_8CAI_007

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAI_007 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0656

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8CAI|1|A|A|320
8CAI|1|A|A|321
8CAI|1|A|C|322
8CAI|1|A|U|323
8CAI|1|A|G|324
8CAI|1|A|A|325
8CAI|1|A|G|326
8CAI|1|A|A|327
8CAI|1|A|C|328
8CAI|1|A|A|329
8CAI|1|A|C|330
8CAI|1|A|G|331
8CAI|1|A|G|332
8CAI|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20