3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CAI_014 not in the Motif Atlas
Homologous match to HL_5J7L_015
Geometric discrepancy: 0.0674
The information below is about HL_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8CAI|1|A|C|689
8CAI|1|A|G|690
8CAI|1|A|G|691
8CAI|1|A|U|692
8CAI|1|A|G|693
8CAI|1|A|A|694
8CAI|1|A|A|695
8CAI|1|A|A|696
8CAI|1|A|U|697
8CAI|1|A|G|698

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
Small ribosomal subunit protein uS11
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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